NGS Console
NGS Data Analysis System
NGS- Console is dedicated software for laboratories running next generation sequencings tests. It integrates various tools and packages including GATK, Picard, SAMTools, FASTQC into one simple and ease to operate automated framework. The modular architecture of the pipeline enables incorporating alternative open-source and commercially available bioinformatics packages and algorithms.
Each step of your pipeline can be overlooked in a real-time manner providing full control of the process. In addition to that, users have an access to variety of output files, including BAM file, BAI file, VCF file and final CVS report.
Using data included in InterOp and FASTQ files you can visualize run and sample QC parameters and set customizable thresholds with different restriction levels easing the decision to proceed with the pipelines. QC can be controlled on both run and sample level by changing distinct sequencing parameters.
NGS- Console is ideal for customers working with large datasets demanding paralleling of analysis to shorten time from sample collection to final report generation. Depending on the requirements of laboratory, various sequencing protocols can be analyzed, including whole genome sequencing (WGS), whole exome sequencing (WES), Trio analysis and customized panels. A key application of NGS-Console is detection of genetic variants associated with disease phenotypes. Detected variants can be filtered using curated disease-associated gen sets but also by applying personalized filters based on patients’ phenotype.
[1] A review of bioinformatic pipeline frameworks” Briefings in bioinformatics vol. 18,3 (2016): 530-536.
QUALITY
QC & Control
With data included in your InterOp and FASTQ files you can visualize your run and sample QC parameters and set customizable thresholds with different restriction levels easing the decision to proceed with your pipelines. QC can be controlled on both run and sample level by changing distinct parameters like: Per base sequence quality, Per tile sequence quality, Per sequence quality scores, Per base sequence content, Per sequence GC content Per base N content, Sequence Length Distribution, Sequence Duplication Levels, Overrepresented sequences, Adapter Content.
Insight into entire pipeline process
Each step of your pipeline can be overlooked in a real-time manner to make sure you can control the process. In addition to that, you will have an access to variety of output files, including BAM file, BAI file, VCF file and final CVS report.
TIME-EFFICENCY
Pipeline paralleling
Understanding the necessity to process your data swiftly and efficiently NGS Console uses paralleling algorithms to enable the run of few pipelines at the same time.
Pipeline scheduling
Prioritizing your pipelines is a key to successfully conduct outcomes and release reports when you are dealing with changing and dynamic clinical situations. NGS Console enables to manage the order of running your pipelines and prioritize samples based on current necessities.
OPORTUNITIES
Full range of DNA sequencing analysis
Depending on the requirements of your laboratory, you can analyze outcomes of various sequencing protocols, including whole genome sequencing (WGS), whole exome sequencing (WES), Trio analysis and customized panels.
LIMS integration
NGS Console can be fully integrated with our LIMS system. Which allows you easily manage all of your tests in LabStorm and transfer orders directly to Console.
Our products
LIMS
Work management system in laboratories of various profiles: medical, environmental and industrial. It supports the processes of testing and developing samples, monitoring the warehouse, inventory and apparatus.
Biobank
Sample repository management system, enables supervision over the storage and distribution of biological materials. Intended for both scientific and commercial biobanks.
QMS
Software aimed at organizations with an implemented quality management system. It facilitates the supervision of documentation, handling corrective and preventive actions (CAPA), monitoring trainings or conducting audits.
Genetics ISS
A software package containing solutions for cytogenetics, molecular biology, immunogenetics, flow cytometry, biochemistry and pathology, aimed at facilities with an extensive diagnostic profile. Possibility of integration with the hospital system.
SoftGenePortal
A platform that allows to place orders for tests and access results and reports online, both by laboratories and directly by patients or doctors.
SoftPath
A specialized laboratory system dedicated to pathomorphological and histopathological laboratories.
Data Portal
A platform designed for storing, posting and sharing big data sets. Integrated with other applications, it facilitates transfer and distribution of data.
WebDMI
Is a modern software for managing the flow of data between LIS systems and medical instruments as well as software supporting the analysis of patient results.
